6. EM算法-高斯混合模型GMM+Lasso详细代码实现

1. 前言

我们之前有介绍过4. EM算法-高斯混合模型GMM详细代码实现，在那片博文里面把GMM说涉及到的过程，可能会遇到的问题，基本讲了。今天我们升级下，主要一起解析下EM算法中GMM（搞事混合模型）带惩罚项的详细代码实现。

2. 原理

由于我们的极大似然公式加上了惩罚项，所以整个推算的过程在几个地方需要修改下。

在带penality的GMM中，我们假设协方差是一个对角矩阵，这样的话，我们计算高斯密度函数的时候，只需要把样本各个维度与对应的(mu_k)和(sigma_k)计算一维高斯分布，再相加即可。不需要通过多维高斯进行计算，也不需要协方差矩阵是半正定的要求。

我们给上面的(1)式加入一个惩罚项，

[lambdasum_{k=1}^Ksum_{j=1}^Pfrac{|mu_k-ar{x}_j|}{s_j} ]

其中的(P)是样本的维度。(ar{x}_j)表示每个维度的平均值，(s_j)表示每个维度的标准差。这个penality是一个L1范式，对(mu_k)进行约束。

加入penality后(1)变为

[L( heta, heta^{(j)})=sum_{k=1}^Kn_k[logpi_k-frac{1}{2}(log(oldsymbol{Sigma_k})+frac{{(x_i-oldsymbol{mu}_k})^2}{oldsymbol{Sigma}_k})] - lambdasum_{k=1}^Ksum_{j=1}^Pfrac{|mu_k-ar{x}_j|}{s_j} ]

这里需要注意的一点是，因为penality有一个绝对值，所以在对(mu_k)求导的时候，需要分情况。于是(2)变成了

[mu_k=frac{1}{n_k}sum_{i=1}^Ngamma_{ik}x_i ]

[mu_k= left {egin{array}{cc} frac{1}{n_k}(sum_{i=1}^Ngamma_{ik}x_i - frac{lambdasigma^2}{s_j}), & mu_k >= ar{x}_j\ frac{1}{n_k}(sum_{i=1}^Ngamma_{ik}x_i + frac{lambdasigma^2}{s_j}), & mu_k < ar{x}_j end{array} ight. ]

3. 算法实现

• 和不带惩罚项的GMM不同的是，我们GMM+LASSO的计算高斯密度函数有所变化。

#计算高斯密度概率函数，样本的高斯概率密度函数，其实就是每个一维mu,sigma的高斯的和
def log_prob(self, X, mu, sigma):
    N, D = X.shape
    logRes = np.zeros(N)
    for i in range(N):
        a = norm.logpdf(X[i,:], loc=mu, scale=sigma)
        logRes[i] = np.sum(a)
    return logRes

• 在m-step中计算(mu_{k+1})的公式需要变化，先通过比较(mu_{kj})和(means_{kj})的大小，来确定绝对值shift的符号。

def m_step(self, step):
    gammaNorm = np.array(np.sum(self.gamma, axis=0)).reshape(self.K, 1)
    self.alpha = gammaNorm / np.sum(gammaNorm)
    for k in range(self.K):
        Nk = gammaNorm[k]
        if Nk == 0:
            continue
        for j in range(self.D):
            if step >= self.beginPenaltyTime:
                # 算出penality的偏移量shift，通过当前维度的mu和样本均值比较，确定shift的符号，相当于把lasso的绝对值拆开了
                shift = np.square(self.sigma[k, j]) * self.penalty / (self.std[j] * Nk)
                if self.mu[k, j] >= self.means[j]:
                    shift = shift
                else:
                    shift = -shift
            else:
                shift = 0
            self.mu[k, j] = np.dot(self.gamma[:, k].T, self.X[:, j]) / Nk - shift
            self.sigma[k, j] = np.sqrt(np.sum(np.multiply(self.gamma[:, k], np.square(self.X[:, j] - self.mu[k, j]))) / Nk)

• 最后需要修改loglikelihood的计算公式

def GMM_EM(self):
    self.init_paras()
    for i in range(self.times):
        #m step
        self.m_step(i)
        # e step
        logGammaNorm, self.gamma= self.e_step(self.X)
        #loglikelihood
        loglike = self.logLikelihood(logGammaNorm)
        #penalty
        pen = 0
        if i >= self.beginPenaltyTime:
            for j in range(self.D):
                pen += self.penalty * np.sum(abs(self.mu[:,j] - self.means[j])) / self.std[j]

        # print("step = %s, alpha = %s, loglike = %s"%(i, [round(p[0], 5) for p in self.alpha.tolist()], round(loglike - pen, 5)))
        # if abs(self.loglike - loglike) < self.tol:
        #     break
        # else:

        self.loglike = loglike - pen

4. GMM算法实现结果

用我实现的GMM+LASSO算法，对多个penality进行计算，选出loglikelihood最大的k和penality，与sklearn的结果比较。

fileName = amix1-est.dat, k = 2, penalty = 0 alpha = [0.52838, 0.47162], loglike = -693.34677
fileName = amix1-est.dat, k = 2, penalty = 0 alpha = [0.52838, 0.47162], loglike = -693.34677
fileName = amix1-est.dat, k = 2, penalty = 1 alpha = [0.52789, 0.47211], loglike = -695.26835
fileName = amix1-est.dat, k = 2, penalty = 1 alpha = [0.52789, 0.47211], loglike = -695.26835
fileName = amix1-est.dat, k = 2, penalty = 2 alpha = [0.52736, 0.47264], loglike = -697.17009
fileName = amix1-est.dat, k = 2, penalty = 2 alpha = [0.52736, 0.47264], loglike = -697.17009
myself GMM alpha = [0.52838, 0.47162], loglikelihood = -693.34677, bestP = 0
sklearn GMM alpha = [0.53372, 0.46628], loglikelihood = -176.73112
succ = 299/300
succ = 0.9966666666666667
[0 1 0 0 1 1 0 1 1 1 0 0 1 0 0 1 0 0 0 1]
[0 1 0 0 1 0 0 1 1 1 0 0 1 0 0 1 0 0 0 1]
fileName = amix1-tst.dat, loglike = -2389.1852339407087
fileName = amix1-val.dat, loglike = -358.1157431278091
fileName = amix2-est.dat, k = 2, penalty = 0 alpha = [0.56, 0.44], loglike = 53804.54265
fileName = amix2-est.dat, k = 2, penalty = 0 alpha = [0.82, 0.18], loglike = 24902.5522
fileName = amix2-est.dat, k = 2, penalty = 1 alpha = [0.82, 0.18], loglike = 23902.65183
fileName = amix2-est.dat, k = 2, penalty = 1 alpha = [0.56, 0.44], loglike = 52929.96459
fileName = amix2-est.dat, k = 2, penalty = 2 alpha = [0.82, 0.18], loglike = 22907.40397
fileName = amix2-est.dat, k = 2, penalty = 2 alpha = [0.82, 0.18], loglike = 22907.40397
myself GMM alpha = [0.56, 0.44], loglikelihood = 53804.54265, bestP = 0
sklearn GMM alpha = [0.56217, 0.43783], loglikelihood = 11738677.90164
succ = 200/200
succ = 1.0
[0 1 0 0 1 0 1 1 0 0 0 1 1 0 1 0 1 1 0 1]
[0 1 0 0 1 0 1 1 0 0 0 1 1 0 1 0 1 1 0 1]
fileName = amix2-tst.dat, loglike = 51502.878096147084
fileName = amix2-val.dat, loglike = 6071.217012747491
fileName = golub-est.dat, k = 2, penalty = 0 alpha = [0.575, 0.425], loglike = -24790.19895
fileName = golub-est.dat, k = 2, penalty = 0 alpha = [0.525, 0.475], loglike = -24440.82743
fileName = golub-est.dat, k = 2, penalty = 1 alpha = [0.55, 0.45], loglike = -25582.27485
fileName = golub-est.dat, k = 2, penalty = 1 alpha = [0.6, 0.4], loglike = -26137.97508
fileName = golub-est.dat, k = 2, penalty = 2 alpha = [0.55, 0.45], loglike = -26686.02411
fileName = golub-est.dat, k = 2, penalty = 2 alpha = [0.55, 0.45], loglike = -26941.68964
myself GMM alpha = [0.525, 0.475], loglikelihood = -24440.82743, bestP = 0
sklearn GMM alpha = [0.5119, 0.4881], loglikelihood = 13627728.10766
succ = 29/40
succ = 0.725
[0 1 0 1 0 1 0 1 0 1 0 0 0 0 0 1 1 1 0 1]
[0 1 0 1 1 1 0 0 1 1 0 1 0 1 0 0 1 1 0 0]
fileName = golub-tst.dat, loglike = -12949.606698037718
fileName = golub-val.dat, loglike = -11131.35137056415

5. 总结

通过一番改造，实现了GMM+LASSO的代码，如果读者有什么好的改进方法，或者我有什么错误的地方，希望多多指教。