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  • fastqc出现错误

    先用conda安装

    conda install fastqc 
    

    很顺利
    输入

    fastqc
    

    结果

    Exception in thread "main" java.awt.HeadlessException: 
    No X11 DISPLAY variable was set, but this program performed an operation which requires it.
        at java.awt.GraphicsEnvironment.checkHeadless(GraphicsEnvironment.java:204)
        at java.awt.Window.<init>(Window.java:536)
        at java.awt.Frame.<init>(Frame.java:420)
        at java.awt.Frame.<init>(Frame.java:385)
        at javax.swing.JFrame.<init>(JFrame.java:189)
        at uk.ac.babraham.FastQC.FastQCApplication.<init>(FastQCApplication.java:63)
        at uk.ac.babraham.FastQC.FastQCApplication.main(FastQCApplication.java:332)
    

    可是输入

    java -version
    
    java version "1.7.0_79"
    OpenJDK Runtime Environment (IcedTea 2.5.6) (7u79-2.5.6-0ubuntu1.15.04.1)
    OpenJDK Client VM (build 24.79-b02, mixed mode, sharing)
    

    这个网上说没有图形界面
    可以这样

    fastqc * .fastq&
    

    或者

    fastqc * .fq.gz&
    

    都可以

     fastqc *.fq.gz &             [1] 117993
    (fcx2.7) [train@train duanefuhuangF5-1_NDSW53945]$ Started analysis of duanefuhuangF5-1_NDSW53945_1.fq.gz
    Approx 5% complete for duanefuhuangF5-1_NDSW53945_1.fq.gz
    Approx 10% complete for duanefuhuangF5-1_NDSW53945_1.fq.gz
    
    生物学学渣,转行中,目前在研究生物信息及数据挖掘。如有问题或建议,请多多赐教。
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  • 原文地址:https://www.cnblogs.com/huangyinger/p/10429854.html
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