linux系统redhat8.3安装R4.0.3（编译安装）

1、查看当前系统

[root@rhel8 home]# cat /etc/redhat-release
Red Hat Enterprise Linux release 8.3 (Ootpa)
[root@rhel8 home]# hostnamectl
   Static hostname: rhel8
         Icon name: computer-vm
           Chassis: vm
        Machine ID: bd17d96c46664b648189528dede70fa5
           Boot ID: 9ea60af5584142d685d2b13bd5ad2929
    Virtualization: vmware
  Operating System: Red Hat Enterprise Linux 8.3 (Ootpa)
       CPE OS Name: cpe:/o:redhat:enterprise_linux:8.3:GA
            Kernel: Linux 4.18.0-240.el8.x86_64
      Architecture: x86-64

2、测试R

[root@rhel8 home]# R
bash: R: command not found...

3、下载R安装包

[root@rhel8 home]# wget https://mirror.bjtu.edu.cn/cran/src/base/R-4/R-4.0.3.tar.gz
--2021-02-01 16:53:46--  https://mirror.bjtu.edu.cn/cran/src/base/R-4/R-4.0.3.tar.gz
Resolving mirror.bjtu.edu.cn (mirror.bjtu.edu.cn)... 202.112.154.58, 2001:da8:205::58
Connecting to mirror.bjtu.edu.cn (mirror.bjtu.edu.cn)|202.112.154.58|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 33497010 (32M) [application/octet-stream]
Saving to: ‘R-4.0.3.tar.gz’

R-4.0.3.tar.gz                    100%[==========================================================>]  31.94M  66.9MB/s    in 0.5s

2021-02-01 16:53:47 (66.9 MB/s) - ‘R-4.0.3.tar.gz’ saved [33497010/33497010]

[root@rhel8 home]# ls
liujiaxin01  R-4.0.3.tar.gz
[root@rhel8 home]# tar -xzvf R-4.0.3.tar.gz
liujiaxin01  R-4.0.3  R-4.0.3.tar.gz
[root@rhel8 home]# cd R-4.0.3/
[root@rhel8 R-4.0.3]# ls
ChangeLog    configure     COPYING  etc      m4           Makefile.fw  po      share  SVN-REVISION  tools    VERSION-NICK
config.site  configure.ac  doc      INSTALL  Makeconf.in  Makefile.in  README  src    tests         VERSION

4、创建R安装目录

[root@rhel8 R-4.0.3]# mkdir -p /home/software/R

5、

[root@rhel8 R-4.0.3]# ./configure --prefix=/home/software/R/ --enable-R-shlib
…………
…………
checking for cl.exe... no
configure: error: in `/home/R-4.0.3':
configure: error: no acceptable C compiler found in $PATH
See `config.log' for more details

6、

[root@rhel8 R-4.0.3]# yum install gcc-c++ -y
…………
…………
Installed:
  cpp-8.3.1-5.1.el8.x86_64                    gcc-8.3.1-5.1.el8.x86_64                    gcc-c++-8.3.1-5.1.el8.x86_64
  glibc-devel-2.28-127.el8.x86_64             glibc-headers-2.28-127.el8.x86_64           isl-0.16.1-6.el8.x86_64
  kernel-headers-4.18.0-240.el8.x86_64        libstdc++-devel-8.3.1-5.1.el8.x86_64        libxcrypt-devel-4.1.1-4.el8.x86_64

Complete!

7、

[root@rhel8 R-4.0.3]# ./configure --prefix=/home/software/R/ --enable-R-shlib
…………
…………
checking whether we are using the GNU Fortran compiler... no
checking whether  accepts -g... no
configure: error: No Fortran compiler found

8、

[root@rhel8 R-4.0.3]# yum install gcc-gfortran -y
…………
…………
Installed:
  gcc-gfortran-8.3.1-5.1.el8.x86_64               libgfortran-8.3.1-5.1.el8.x86_64          libquadmath-8.3.1-5.1.el8.x86_64
  libquadmath-devel-8.3.1-5.1.el8.x86_64

Complete!

9、

[root@rhel8 R-4.0.3]# ./configure --prefix=/home/software/R/ --enable-R-shlib
…………
…………
checking for main in -ltermlib... no
checking for rl_callback_read_char in -lreadline... no
configure: error: --with-readline=yes (default) and headers/libs are not available

10、

[root@rhel8 R-4.0.3]# yum install readline-devel -y
…………
…………
Installed:
  ncurses-c++-libs-6.1-7.20180224.el8.x86_64      ncurses-devel-6.1-7.20180224.el8.x86_64      readline-devel-7.0-10.el8.x86_64

Complete!

11、

[root@rhel8 R-4.0.3]# ./configure --prefix=/home/software/R/ --enable-R-shlib
…………
…………
checking for mbstate_t... yes
checking for ICU... no
checking for X... no
configure: error: --with-x=yes (default) and X11 headers/libs are not available

12、

[root@rhel8 R-4.0.3]# yum install libXt-devel -y
…………
…………
Installed:
  libICE-devel-1.0.9-15.el8.x86_64                 libSM-devel-1.2.3-1.el8.x86_64          libX11-devel-1.6.8-3.el8.x86_64
  libXau-devel-1.0.9-3.el8.x86_64                  libXt-devel-1.1.5-12.el8.x86_64         libxcb-devel-1.13.1-1.el8.x86_64
  xorg-x11-proto-devel-2020.1-3.el8.noarch

Complete!

13、

[root@rhel8 R-4.0.3]# ./configure --prefix=/home/software/R/ --enable-R-shlib
…………
…………
checking for XDR support... no
checking for inflateInit2_ in -lz... no
checking whether zlib support suffices... configure: error: zlib library and headers are required

14、

[root@rhel8 R-4.0.3]# yum install zlib-devel -y
…………
…………
Installed:
  zlib-devel-1.2.11-16.el8_2.x86_64

Complete!

15、

[root@rhel8 R-4.0.3]# ./configure --prefix=/home/software/R/ --enable-R-shlib
…………
…………
checking mmap support for zlib... yes
checking for BZ2_bzlibVersion in -lbz2... no
checking whether bzip2 support suffices... configure: error: bzip2 library and headers are required

16、

[root@rhel8 R-4.0.3]# yum -y install bzip2-devel
…………
…………
Installed:
  bzip2-devel-1.0.6-26.el8.x86_64

Complete!

17、

[root@rhel8 R-4.0.3]# ./configure --prefix=/home/software/R/ --enable-R-shlib
…………
…………
checking whether bzip2 support suffices... yes
checking for lzma_version_number in -llzma... no
configure: error: "liblzma library and headers are required"

18、

[root@rhel8 R-4.0.3]# yum -y install xz-devel.x86_64
…………
…………
Installed:
  xz-devel-5.2.4-3.el8.x86_64

Complete!

19、

[root@rhel8 R-4.0.3]# ./configure --prefix=/home/software/R/ --enable-R-shlib
…………
…………
checking for pcre2-config... no
checking whether PCRE support suffices... no
configure: error: PCRE2 library and headers are required, or use --with-pcre1 and PCRE >= 8.32 with UTF-8 support

20、下载安装PCRE2

[root@rhel8 R-4.0.3]# wget -P /home/ ftp://ftp.pcre.org/pub/pcre/pcre2-10.36.zip
--2021-02-01 17:19:44--  ftp://ftp.pcre.org/pub/pcre/pcre2-10.36.zip
           => ‘/home/pcre2-10.36.zip’
Resolving ftp.pcre.org (ftp.pcre.org)... 131.111.8.88
Connecting to ftp.pcre.org (ftp.pcre.org)|131.111.8.88|:21... connected.
Logging in as anonymous ... Logged in!
==> SYST ... done.    ==> PWD ... done.
==> TYPE I ... done.  ==> CWD (1) /pub/pcre ... done.
==> SIZE pcre2-10.36.zip ... 2550081
==> PASV ... done.    ==> RETR pcre2-10.36.zip ... done.
Length: 2550081 (2.4M) (unauthoritative)

pcre2-10.36.zip                   100%[==========================================================>]   2.43M  74.3KB/s    in 80s

2021-02-01 17:21:12 (31.2 KB/s) - ‘/home/pcre2-10.36.zip’ saved [2550081]

[root@rhel8 R-4.0.3]# cd /home/
[root@rhel8 home]# ls
liujiaxin01  pcre2-10.36.zip  R-4.0.3  R-4.0.3.tar.gz  software
[root@rhel8 home]# unzip pcre2-10.36.zip
[root@rhel8 home]# ls
liujiaxin01  pcre2-10.36  pcre2-10.36.zip  R-4.0.3  R-4.0.3.tar.gz  software
[root@rhel8 home]# cd pcre2-10.36/
[root@rhel8 pcre2-10.36]# ls
132html     cmake              configure.ac  install-sh            m4                   perltest.sh      src
aclocal.m4  CMakeLists.txt     COPYING       libpcre2-16.pc.in     Makefile.am          PrepareRelease   testdata
ar-lib      compile            depcomp       libpcre2-32.pc.in     Makefile.in          README           test-driver
AUTHORS     config-cmake.h.in  Detrail       libpcre2-8.pc.in      missing              RunGrepTest
ChangeLog   config.guess       doc           libpcre2-posix.pc.in  NEWS                 RunGrepTest.bat
CheckMan    config.sub         HACKING       LICENCE               NON-AUTOTOOLS-BUILD  RunTest
CleanTxt    configure          INSTALL       ltmain.sh             pcre2-config.in      RunTest.bat

21、

[root@rhel8 pcre2-10.36]# ./configure
…………
…………
config.status: error: in `/home/pcre2-10.36':
config.status: error: Something went wrong bootstrapping makefile fragments
    for automatic dependency tracking.  If GNU make was not used, consider
    re-running the configure script with MAKE="gmake" (or whatever is
    necessary).  You can also try re-running configure with the
    '--disable-dependency-tracking' option to at least be able to build
    the package (albeit without support for automatic dependency tracking).
See `config.log' for more details

　　

22、

[root@rhel8 pcre2-10.36]# yum install make -y
…………
…………
Installed:
  make-1:4.2.1-10.el8.x86_64

Complete!

23、

[root@rhel8 pcre2-10.36]# ./configure
…………
…………
    Link pcre2test with libedit ........ : no
    Link pcre2test with libreadline .... : no
    Valgrind support ................... : no
    Code coverage ...................... : no
    Fuzzer support ..................... : no
    Use %zu and %td .................... : auto

24、

[root@rhel8 pcre2-10.36]# make
…………
…………
  CCLD     libpcre2-8.la
  CCLD     pcre2grep
  CC       src/pcre2test-pcre2test.o
  CC       src/libpcre2_posix_la-pcre2posix.lo
  CCLD     libpcre2-posix.la
  CCLD     pcre2test
make[1]: Leaving directory '/home/pcre2-10.36'

25、

[root@rhel8 pcre2-10.36]# make install
…………
…………
 /usr/bin/mkdir -p '/usr/local/lib/pkgconfig'
 /usr/bin/install -c -m 644 libpcre2-8.pc libpcre2-posix.pc '/usr/local/lib/pkgconfig'
make[2]: Leaving directory '/home/pcre2-10.36'
make[1]: Leaving directory '/home/pcre2-10.36'

26、

[root@rhel8 pcre2-10.36]# cd /home/R-4.0.3/
[root@rhel8 R-4.0.3]# ls
ChangeLog    configure     doc      m4           Makefile.in     Makefrag.cxx  README  SVN-REVISION  VERSION
config.log   configure.ac  etc      Makeconf.in  Makefrag.cc     Makefrag.m    share   tests         VERSION-NICK
config.site  COPYING       INSTALL  Makefile.fw  Makefrag.cc_lo  po            src     tools
[root@rhel8 R-4.0.3]# ./configure --prefix=/home/software/R/ --enable-R-shlib
…………
…………
checking curl/curl.h usability... no
checking curl/curl.h presence... no
checking for curl/curl.h... no
configure: error: libcurl >= 7.28.0 library and headers are required with support for https

27、

[root@rhel8 R-4.0.3]# yum install curl curl-devel -y
…………
…………
Installed:
  libcurl-devel-7.61.1-14.el8.x86_64

Complete!

28、

[root@rhel8 R-4.0.3]# ./configure --prefix=/home/software/R/ --enable-R-shlib
…………
…………
  Recommended packages:        yes

configure: WARNING: you cannot build info or HTML versions of the R manuals
configure: WARNING: you cannot build PDF versions of the R manuals
configure: WARNING: you cannot build PDF versions of vignettes and help pages

29、

[root@rhel8 R-4.0.3]# yum -y install java-1.8.0-openjdk java-1.8.0-openjdk-devel
…………
…………
Installed:
  copy-jdk-configs-3.7-4.el8.noarch                                    java-1.8.0-openjdk-1:1.8.0.265.b01-4.el8.x86_64
  java-1.8.0-openjdk-devel-1:1.8.0.265.b01-4.el8.x86_64                java-1.8.0-openjdk-headless-1:1.8.0.265.b01-4.el8.x86_64
  javapackages-filesystem-5.3.0-1.module+el8+2447+6f56d9a6.noarch      lksctp-tools-1.0.18-3.el8.x86_64
  ttmkfdir-3.0.9-54.el8.x86_64                                         tzdata-java-2020a-1.el8.noarch
  xorg-x11-fonts-Type1-7.5-19.el8.noarch

Complete!

30、

[root@rhel8 R-4.0.3]# ./configure --prefix=/home/software/R/ --enable-R-shlib
…………
…………
  Recommended packages:        yes

configure: WARNING: you cannot build info or HTML versions of the R manuals
configure: WARNING: you cannot build PDF versions of the R manuals
configure: WARNING: you cannot build PDF versions of vignettes and help pages

31、

[root@rhel8 R-4.0.3]# make
…………
…………
JAVA_HOME        : /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.265.b01-4.el8.x86_64/jre
Java library path: $(JAVA_HOME)/lib/amd64/server
JNI cpp flags    : -I$(JAVA_HOME)/../include -I$(JAVA_HOME)/../include/linux
JNI linker flags : -L$(JAVA_HOME)/lib/amd64/server -ljvm
Updating Java configuration in /home/R-4.0.3
Done.

make[1]: Leaving directory '/home/R-4.0.3'

32、

[root@rhel8 R-4.0.3]# make install
…………
…………
  building HTML index ...
make[2]: Leaving directory '/home/R-4.0.3/src/library'
make[1]: Leaving directory '/home/R-4.0.3/src'
make[1]: Entering directory '/home/R-4.0.3/tests'
make[1]: Nothing to be done for 'install'.
make[1]: Leaving directory '/home/R-4.0.3/tests'

33、添加环境变量

[root@rhel8 R-4.0.3]# vim /etc/profile
R_HOME=/home/software/R
PATH=$PATH:$R_HOME/bin  ## 添加后保存退出
[root@rhel8 R-4.0.3]# source /etc/profile  ## 生效

34、测试R

[root@rhel8 R-4.0.3]# R

R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> 5 + 8
[1] 13
> quit()
Save workspace image? [y/n/c]: n

安装完成。

35、参考

https://blog.csdn.net/stone1116/article/details/112986790

https://blog.csdn.net/wumiqing1/article/details/54232345

https://blog.csdn.net/john_f_lau/article/details/17652523

http://blog.sina.com.cn/s/blog_6caea8bf0100zfbu.html

https://blog.csdn.net/weixin_43404791/article/details/108980273

https://blog.csdn.net/weixin_43833642/article/details/105048704