1、问题安装bedtools 执行make命令是报错fatal error: lzma.h: No such file or directory
root@DESKTOP-1N42TVH:/home/software/bedtools2# ls LICENSE Makefile README.md bin data docs genomes obj scripts src test tutorial root@DESKTOP-1N42TVH:/home/software/bedtools2# make
2、解决方法
root@DESKTOP-1N42TVH:/home/software/bedtools2# apt install libbz2-dev
root@DESKTOP-1N42TVH:/home/software/bedtools2# apt install zlib1g-dev
root@DESKTOP-1N42TVH:/home/software/bedtools2# apt install zlib1g-dev
3、再次执行make验证, 已经没有fatal error: lzma.h: No such file or directory,但是出现新的问题,没有python
root@DESKTOP-1N42TVH:/home/software/bedtools2# make
4、安装python
查看系统版本
root@DESKTOP-1N42TVH:/home/software/bedtools2# cat /proc/version Linux version 5.10.16.3-microsoft-standard-WSL2 (oe-user@oe-host) (x86_64-msft-linux-gcc (GCC) 9.3.0, GNU ld (GNU Binutils) 2.34.0.20200220) #1 SMP Fri Apr 2 22:23:49 UTC 2021 root@DESKTOP-1N42TVH:/home/software/bedtools2# cat /etc/issue Ubuntu 20.04.3 LTS \n \l
查看python
root@DESKTOP-1N42TVH:/home/software/bedtools2# python Command 'python' not found, did you mean: command 'python3' from deb python3 command 'python' from deb python-is-python3 root@DESKTOP-1N42TVH:/home/software/bedtools2# python3 ## 系统默认安装的python3 Python 3.8.10 (default, Nov 26 2021, 20:14:08) [GCC 9.3.0] on linux Type "help", "copyright", "credits" or "license" for more information. >>> quit()
5、建立软连接解决
root@DESKTOP-1N42TVH:/home/software/bedtools2# which python3 /usr/bin/python3 root@DESKTOP-1N42TVH:/home/software/bedtools2# ln -s /usr/bin/python3 /usr/bin/python root@DESKTOP-1N42TVH:/home/software/bedtools2# python Python 3.8.10 (default, Nov 26 2021, 20:14:08) [GCC 9.3.0] on linux Type "help", "copyright", "credits" or "license" for more information. >>> quit()
6、再次make测试, 问题解决
root@DESKTOP-1N42TVH:/home/software/bedtools2# ls LICENSE Makefile README.md bin data docs genomes obj scripts src test tutorial root@DESKTOP-1N42TVH:/home/software/bedtools2# make Building BEDTools: ========================================================= CXXFLAGS is [-g -Wall -O2 -std=c++11 ] DETECTED_VERSION = v2.30.0 CURRENT_VERSION = v2.30.0 - Building main bedtools binary. done. - Creating executables for old CLI. done. * compiling src/htsutil.cpp