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  • 安装bedtools报错 fatal error: lzma.h: No such file or directory

    1、问题安装bedtools  执行make命令是报错fatal error: lzma.h: No such file or directory

    root@DESKTOP-1N42TVH:/home/software/bedtools2# ls
    LICENSE  Makefile  README.md  bin  data  docs  genomes  obj  scripts  src  test  tutorial
    root@DESKTOP-1N42TVH:/home/software/bedtools2# make

    2、解决方法

    root@DESKTOP-1N42TVH:/home/software/bedtools2# apt install libbz2-dev
    root@DESKTOP-1N42TVH:/home/software/bedtools2# apt install zlib1g-dev
    root@DESKTOP-1N42TVH:/home/software/bedtools2# apt install zlib1g-dev

    3、再次执行make验证, 已经没有fatal error: lzma.h: No such file or directory,但是出现新的问题,没有python

    root@DESKTOP-1N42TVH:/home/software/bedtools2# make

    4、安装python

    查看系统版本

    root@DESKTOP-1N42TVH:/home/software/bedtools2# cat /proc/version
    Linux version 5.10.16.3-microsoft-standard-WSL2 (oe-user@oe-host) (x86_64-msft-linux-gcc (GCC) 9.3.0, GNU ld (GNU Binutils) 2.34.0.20200220) #1 SMP Fri Apr 2 22:23:49 UTC 2021
    root@DESKTOP-1N42TVH:/home/software/bedtools2# cat /etc/issue
    Ubuntu 20.04.3 LTS \n \l

    查看python

    root@DESKTOP-1N42TVH:/home/software/bedtools2# python
    
    Command 'python' not found, did you mean:
    
      command 'python3' from deb python3
      command 'python' from deb python-is-python3
    
    root@DESKTOP-1N42TVH:/home/software/bedtools2# python3    ## 系统默认安装的python3
    Python 3.8.10 (default, Nov 26 2021, 20:14:08)
    [GCC 9.3.0] on linux
    Type "help", "copyright", "credits" or "license" for more information.
    >>> quit()

    5、建立软连接解决

    root@DESKTOP-1N42TVH:/home/software/bedtools2# which python3
    /usr/bin/python3
    root@DESKTOP-1N42TVH:/home/software/bedtools2# ln -s /usr/bin/python3 /usr/bin/python
    root@DESKTOP-1N42TVH:/home/software/bedtools2# python
    Python 3.8.10 (default, Nov 26 2021, 20:14:08)
    [GCC 9.3.0] on linux
    Type "help", "copyright", "credits" or "license" for more information.
    >>> quit()

    6、再次make测试, 问题解决

    root@DESKTOP-1N42TVH:/home/software/bedtools2# ls
    LICENSE  Makefile  README.md  bin  data  docs  genomes  obj  scripts  src  test  tutorial
    root@DESKTOP-1N42TVH:/home/software/bedtools2# make
    Building BEDTools:
    =========================================================
    CXXFLAGS is [-g -Wall -O2 -std=c++11 ]
    DETECTED_VERSION = v2.30.0
    CURRENT_VERSION  = v2.30.0
    - Building main bedtools binary.
    done.
    - Creating executables for old CLI.
    done.
      * compiling src/htsutil.cpp
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  • 原文地址:https://www.cnblogs.com/liujiaxin2018/p/15757153.html
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