caffe安装anaconda后重新编译caffe报错

ks@ks-go:~/caffe-master$ make -j16
CXX/LD -o .build_release/tools/convert_imageset.bin
CXX/LD -o .build_release/tools/net_speed_benchmark.bin
CXX/LD -o .build_release/tools/upgrade_net_proto_text.bin
CXX/LD -o .build_release/tools/upgrade_net_proto_binary.bin
CXX/LD -o .build_release/tools/test_net.bin
CXX/LD -o .build_release/tools/finetune_net.bin
CXX/LD -o .build_release/tools/train_net.bin
CXX/LD -o .build_release/tools/device_query.bin
CXX/LD -o .build_release/tools/upgrade_solver_proto_text.bin
CXX/LD -o .build_release/tools/caffe.bin
CXX/LD -o .build_release/tools/extract_features.bin
CXX/LD -o .build_release/tools/compute_image_mean.bin
.build_release/tools/test_net.o：在函数‘boost::system::system_error::what() const’中：
test_net.cpp:(.text._ZNK5boost6system12system_error4whatEv[_ZNK5boost6system12system_error4whatEv]+0x74)：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)’未定义的引用
test_net.cpp:(.text._ZNK5boost6system12system_error4whatEv[_ZNK5boost6system12system_error4whatEv]+0xa1)：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned long)’未定义的引用
test_net.cpp:(.text._ZNK5boost6system12system_error4whatEv[_ZNK5boost6system12system_error4whatEv]+0xe3)：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned long)’未定义的引用
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so：对��.build_release/tools/train_net.o：在函数‘boost::system::system_error::what() const’中：
train_net.cpp:(.text._ZNK5boost6system12system_error4whatEv[_ZNK5boost6system12system_error4whatEv]+0x74)：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)’未定义的引用
train_net.cpp:(.text._ZNK5boost6system12system_error4whatEv[_ZNK5boost6system12system_error4whatEv]+0xa1)：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned long)’未定义的引用
train_net.cpp:(.text._ZNK5boost6system12system_error4whatEv[_ZNK5boost6system12system_error4whatEv]+0xe3)：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned long)’未定义的引用
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const@GLIBCXX_3.4.21’未定义的引用
/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_create(unsigned long&, unsigned long)@GLIBCXX_3.4.21’未定义的引用
/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace_aux(unsigned long, unsigned long, unsigned long, char)@GLIBCXX_3.4.21’未定义的引用
/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned long)@GLIBCXX_3.4.21’未定义的引用
/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)@GLIBCXX_3.4.21’未定义的引用
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_construct(unsigned long, char)@GLIBCXX_3.4.21’未定义的引用
/usr/local/lib/libglog.so：对‘vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >@GLIBCXX_3.4.21’未定义的引用
/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::assign(char const*)@GLIBCXX_3.4.21’未定义的引用
/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(std::__cxx11::basic_string<char, std::<char_traits<char>char>, std:> :allocator<char> > const&) const@GLIBCXX_3.4.21’未定义的引用
/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_create(unsigned long&, unsigned long)@GLIBCXX_3.4.21’未定义的引用
/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace_aux(unsigned long, unsigned long, unsigned long, char)@GLIBCXX_3.4.21’未定义的引用
/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned long)@GLIBCXX_3.4.21’未定义的引用
/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)@GLIBCXX_3.4.21’未定义的引用
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_construct(unsigned long, char)@GLIBCXX_3.4.21’未定义的引用
/usr/local/lib/�libglog.so：对‘vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >@GLIBCXX_3.4.21’未定义的引用
/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::assign(char const*)@GLIBCXX_3.4.21’未定义的引用
/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)@GLIBCXX_3.4.21’未定义的引用
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_erase(unsigned long, unsigned long)@GLIBCXX_3.4.21’未定义的引用
/usr/local/lib/libglog.so：对‘vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >@GLIBCXX_3.4.21’未定义的引用
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::reserve(unsigned long)@GLIBCXX_3.4.21’未定义的引用
/usr/local/lib/libglog.so：collect2: error: ld returned 1 exit status
对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const@GLIBCXX_3.4.21’未定义的引用
collect2: error: ld returned 1 exit status
/../x86_64-linux-gnu/libgflags.so：�对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)’未定义的引用
finetune_net.cpp:(.text._ZNK5boost6system12system_error4whatEv[_ZNK5boost6system12system_error4whatEv]+0xa1)：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned long)’未定义的引用
finetune_net.cpp:(.text._ZNK5boost6system12system_error4whatEv[_ZNK5boost6system12system_error4whatEv]+0xe3)：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned long)’未定义的引用
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const@GLIBCXX_3.4.21’未定义的引用
/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_create(unsigned long&, unsigned long)@GLIBCXX_3.4.21’未定义的引用
/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace_aux(unsigned long, unsigned long, unsigned long, char)@GLIBCXX_3.4.21’未定义的引用
/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned long)@GLIBCXX_3.4.21’未定义的引用
/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)@GLIBCXX_3.4.21’未定义的引用
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_construct(unsigned long, char)@GLIBCXX_3.4.21’未定义的引用
/usr/local/lib/libglog.so：对‘vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >@GLIBCXX_3.4.21’未定义的引用
/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::assign(char const*)@GLIBCXX_3.4.21’未定义的引用
/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)@GLIBCXX_3.4.21’未定义的引用
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_erase(unsigned long, unsigned long)@GLIBCXX_3.4.21’未定义的引用
/usr/local/lib/libglog.so：对‘vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >@GLIBCXX_3.4.21’未定义的引用
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::reserve(unsigned long)@GLIBCXX_3.4.21’未定义的引用
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so：对‘std::__throw_out_of_range_fmt(char const*, ...)@GLIBCXX_3.4.20’未定义的引用
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::rfind(char, unsigned long) const@GLIBCXX_3.4.21’未定义的引用
/usr/local/lib/libglog.so：对‘std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >::_M_sync(char*, unsigned long, unsigned long)@GLIBCXX_3.4.21’未定义的引用
/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::~basic_string()@GLIBCXX_3.4.21’未定义的引用
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::append(char const*)@GLIBCXX_3.4.21’未定义的引用
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::find(char, unsigned long) const@GLIBCXX_3.4.21’未定义的引用
/usr/local/lib/libglog.so：对‘std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::~basic_ostringstream()@GLIBCXX_3.4.21’未定义的引用
/usr/local/lib/libglog.so：对‘VTT for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >@GLIBCXX_3.4.21’未定义的引用
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::find(char const*, unsigned long, unsigned long) const@GLIBCXX_3.4.21’未定义的引用
/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const@GLIBCXX_3.4.21’未定义的引用
collect2: error: ld returned 1 exit status
。。。很长一串问题

对于这个问题找了N久都没有找到答案，在caffe的issue中看到有人有同样的问题，但并没有得到答案，后来在另一个问题中看到了一个方法https://github.com/BVLC/caffe/issues/2348，

cd caffe
cp Makefile.config.example Makefile.config
and change setting in Makefile.config
mkdir build
cd build
cmake ..
./configure (??not sure??)
make all

执行一遍后发现有戏啊，可是又有一个新的关于opencv_imgcodecs的问题，同样在刚才的链接中的方法

add "opencv_imgcodecs" in Makefile.(LIBRARIES += glog gflags protobuf leveldb snappy \
lmdb boost_system hdf5_hl hdf5 m \
opencv_core opencv_highgui opencv_imgproc opencv_imgcodecs)
就是在makefile的“LIBRARIES +=”中添加一个“opencv_imgcodecs”,make clean，再make all这样刚才的问题就没有了

这样就可以了？？？结果又出了一个新的问题，/usr/lib/libopencv_highgui.so.2.4: undefined reference to TIFFRGBAImageOK@LIBTIFF_4.0' 1>

网上说是opencv编译的问题，于是就重新编译opencv，这次编译cmake加上一个参数：

-D BUILD_TIFF=ON
于是又屁颠屁颠的开始编译了，这一次已经有了报错的心里准备了，果然新的问题来了，//usr/lib/x86_64-linux-gnu/libsoxr.so.0:对‘GOMP_parallel@GOMP_4.0’未定义的，
对于这个问题我以为百度一下就能解决，可事实证明我还是too young too simple，这个问题找了很久都没找到答案，但是有个发现，就是稍微沾边的解释里都有anaconda，突然醒悟，我现在遭的罪不都是安装了anaconda后造成的么，搞不好是anaconda与系统兼容造成的，于是我决定anaconda
零时屏蔽了再来编译opencv试试，屏蔽的具体方法是在

sudo gedit ~/.bashrc
在下面这两句话前面加上“#”注释掉
#export PATH="/home/ks/anaconda2/bin:$PATH"
#export LD_LIBRARY_PATH="/home/ks/anaconda2/lib:$LD_LIBRARY_PATH"

然后再次来编译opencv，奇迹出现啦，经过漫长的等待，opencv终于编译完成啦，现在回头想想，caffe之所以编译报那么多错肯定也是由anaconda造成的,但是屏蔽anaconda后用以前的方法直接编译caffe还是会报很多错，不过用上面提到的cmake的方式进行编译就顺利的完成了。

总结一下经验就是：可能是anaconda自带的编译环境的版本有问题，所以今后就算想用anaconda，也要先把caffe和opencv编译好后再装anaconda！