r
root@VM-52-248-ubuntu:/var/www/html/scalaw# cd - /var/www/html root@VM-52-248-ubuntu:/var/www/html# pwd /var/www/html root@VM-52-248-ubuntu:/var/www/html# cd .. root@VM-52-248-ubuntu:/var/www# mkdir rscript root@VM-52-248-ubuntu:/var/www# cd rscript root@VM-52-248-ubuntu:/var/www/rscript# ls root@VM-52-248-ubuntu:/var/www/rscript# ll total 8 drwxr-xr-x 2 root root 4096 Apr 29 02:54 ./ drwxrwxrwx 7 root root 4096 Apr 29 02:54 ../ root@VM-52-248-ubuntu:/var/www/rscript# vim w.r root@VM-52-248-ubuntu:/var/www/rscript# Rscript w.r Call: lm(formula = y ~ x) Residuals: 1 2 3 -32.5 65.0 -32.5 Coefficients: Estimate Std. Error t value Pr(>|t|) (Intercept) 35.00 121.60 0.288 0.822 x 99.50 56.29 1.768 0.328 Residual standard error: 79.61 on 1 degrees of freedom Multiple R-squared: 0.7575, Adjusted R-squared: 0.5151 F-statistic: 3.124 on 1 and 1 DF, p-value: 0.3278 root@VM-52-248-ubuntu:/var/www/rscript# vim w.r root@VM-52-248-ubuntu:/var/www/rscript# cat w.r x<-c(1,2,3) y<-c(102,299,301) model<-lm(y~x) summary(model) root@VM-52-248-ubuntu:/var/www/rscript# R R version 3.2.3 (2015-12-10) -- "Wooden Christmas-Tree" Copyright (C) 2015 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > q() Save workspace image? [y/n/c]: c > w<-"wSTR" > print(w) [1] "wSTR" > q() Save workspace image? [y/n/c]: n root@VM-52-248-ubuntu:/var/www/rscript# vim input.xml root@VM-52-248-ubuntu:/var/www/rscript# library("XML") bash: syntax error near unexpected token `"XML"' root@VM-52-248-ubuntu:/var/www/rscript# R R version 3.2.3 (2015-12-10) -- "Wooden Christmas-Tree" Copyright (C) 2015 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > libiary("XML") Error: could not find function "libiary" > libary("XML") Error: could not find function "libary" > library("XML") Error in library("XML") : there is no package called 'XML' > q() Save workspace image? [y/n/c]: n root@VM-52-248-ubuntu:/var/www/rscript# apt-get install r-base-dev Reading package lists... Done Building dependency tree Reading state information... Done r-base-dev is already the newest version (3.2.3-4). 0 upgraded, 0 newly installed, 0 to remove and 162 not upgraded. root@VM-52-248-ubuntu:/var/www/rscript# R R version 3.2.3 (2015-12-10) -- "Wooden Christmas-Tree" Copyright (C) 2015 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > install.pages("XML") Error: could not find function "install.pages" > install.packages("XML") Installing package into '/usr/local/lib/R/site-library' (as 'lib' is unspecified) --- Please select a CRAN mirror for use in this session --- HTTPS CRAN mirror 1: 0-Cloud [https] 2: Algeria [https] 3: Australia (Canberra) [https] 4: Australia (Melbourne) [https] 5: Australia (Perth) [https] 6: Austria [https] 7: Belgium (Ghent) [https] 8: Brazil (RJ) [https] 9: Brazil (SP 1) [https] 10: Bulgaria [https] 11: Canada (MB) [https] 12: Chile 1 [https] 13: Chile 2 [https] 14: China (Beijing) [https] 15: China (Hefei) [https] 16: China (Lanzhou) [https] 17: Colombia (Cali) [https] 18: Czech Republic [https] 19: Denmark [https] 20: Estonia [https] 21: France (Lyon 1) [https] 22: France (Lyon 2) [https] 23: France (Marseille) [https] 24: France (Montpellier) [https] 25: France (Paris 2) [https] 26: Germany (G<U+00F6>ttingen) [https] 27: Germany (M<U+00FC>nster) [https] 28: Iceland [https] 29: India [https] 30: Indonesia (Jakarta) [https] 31: Ireland [https] 32: Italy (Padua) [https] 33: Japan (Tokyo) [https] 34: Malaysia [https] 35: Mexico (Mexico City) [https] 36: New Zealand [https] 37: Norway [https] 38: Philippines [https] 39: Russia (Moscow) [https] 40: Serbia [https] 41: Spain (A Coru<U+00F1>a) [https] 42: Spain (Madrid) [https] 43: Sweden [https] 44: Switzerland [https] 45: Taiwan (Chungli) [https] 46: Turkey (Denizli) [https] 47: Turkey (Mersin) [https] 48: UK (Bristol) [https] 49: UK (Cambridge) [https] 50: UK (London 1) [https] 51: USA (CA 1) [https] 52: USA (IA) [https] 53: USA (IN) [https] 54: USA (KS) [https] 55: USA (MI 1) [https] 56: USA (OR) [https] 57: USA (TN) [https] 58: USA (TX 1) [https] 59: USA (TX 2) [https] 60: (HTTP mirrors) Selection: 58 trying URL 'https://cran.revolutionanalytics.com/src/contrib/XML_3.98-1.6.tar.gz' Content type 'application/octet-stream' length 1599225 bytes (1.5 MB) ================================================== downloaded 1.5 MB * installing *source* package 'XML' ... ** package 'XML' successfully unpacked and MD5 sums checked checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for sed... /bin/sed checking for pkg-config... no checking for xml2-config... no Cannot find xml2-config ERROR: configuration failed for package 'XML' * removing '/usr/local/lib/R/site-library/XML' The downloaded source packages are in '/tmp/RtmprIBUuy/downloaded_packages' Warning message: In install.packages("XML") : installation of package 'XML' had non-zero exit status > library("XML") Error in library("XML") : there is no package called 'XML' > library("XML") Error in library("XML") : there is no package called 'XML' > install.packages("XML") Installing package into '/usr/local/lib/R/site-library' (as 'lib' is unspecified) trying URL 'https://cran.revolutionanalytics.com/src/contrib/XML_3.98-1.6.tar.gz' Content type 'application/octet-stream' length 1599225 bytes (1.5 MB) ================================================== downloaded 1.5 MB * installing *source* package 'XML' ... ** package 'XML' successfully unpacked and MD5 sums checked checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for sed... /bin/sed checking for pkg-config... no checking for xml2-config... no Cannot find xml2-config ERROR: configuration failed for package 'XML' * removing '/usr/local/lib/R/site-library/XML' The downloaded source packages are in '/tmp/RtmprIBUuy/downloaded_packages' Warning message: In install.packages("XML") : installation of package 'XML' had non-zero exit status > library("XML") Error in library("XML") : there is no package called 'XML' >
root@VM-52-248-ubuntu:/var/www/html/scalaw# apt-get install r-base Reading package lists... Done Building dependency tree Reading state information... Done The following additional packages will be installed: autoconf automake autotools-dev bzip2-doc cdbs debhelper dh-strip-nondeterminism dh-translations gettext gfortran gfortran-5 intltool intltool-debian libarchive-zip-perl libasprintf-dev libauthen-sasl-perl libblas-common libblas-dev libblas3 libbz2-dev libcroco3 libfile-basedir-perl libfile-desktopentry-perl libfile-listing-perl libfile-mimeinfo-perl libfile-stripnondeterminism-perl libfont-afm-perl libfontenc1 libgettextpo-dev libgettextpo0 libgfortran-5-dev libgfortran3 libhtml-form-perl libhtml-format-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-negotiate-perl libio-socket-ssl-perl libipc-system-simple-perl libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblapack3 liblwp-protocol-https-perl liblzma-dev libmail-sendmail-perl libmailtools-perl libncurses5-dev libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpng12-dev libreadline-dev libreadline6-dev libsys-hostname-long-perl libtie-ixhash-perl libtinfo-dev libtk8.6 libunistring0 libwww-perl libwww-robotrules-perl libx11-protocol-perl libxaw7 libxcb-shape0 libxft2 libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxmu6 libxpm4 libxss1 libxv1 libxxf86dga1 m4 po-debconf python-pkg-resources python-scour python-six r-base-core r-base-dev r-base-html r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart r-cran-spatial r-cran-survival r-doc-html r-recommended x11-utils x11-xserver-utils xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc libtool devscripts dh-make gettext-doc autopoint gfortran-multilib gfortran-doc gfortran-5-multilib gfortran-5-doc libgfortran3-dbg libdigest-hmac-perl libgssapi-perl liblapack-doc-man liblapack-doc libcrypt-ssleay-perl liblzma-doc ncurses-doc readline-doc tk8.6 libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools libmail-box-perl python-setuptools python-rsvg python-cairo ess r-doc-info | r-doc-pdf r-mathlib texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo mozilla | www-browser mesa-utils nickle cairo-5c xorg-docs-core gvfs-bin The following NEW packages will be installed: autoconf automake autotools-dev bzip2-doc cdbs debhelper dh-strip-nondeterminism dh-translations gettext gfortran gfortran-5 intltool intltool-debian libarchive-zip-perl libasprintf-dev libauthen-sasl-perl libblas-common libblas-dev libblas3 libbz2-dev libcroco3 libfile-basedir-perl libfile-desktopentry-perl libfile-listing-perl libfile-mimeinfo-perl libfile-stripnondeterminism-perl libfont-afm-perl libfontenc1 libgettextpo-dev libgettextpo0 libgfortran-5-dev libgfortran3 libhtml-form-perl libhtml-format-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-negotiate-perl libio-socket-ssl-perl libipc-system-simple-perl libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblapack3 liblwp-protocol-https-perl liblzma-dev libmail-sendmail-perl libmailtools-perl libncurses5-dev libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpng12-dev libreadline-dev libreadline6-dev libsys-hostname-long-perl libtie-ixhash-perl libtinfo-dev libtk8.6 libunistring0 libwww-perl libwww-robotrules-perl libx11-protocol-perl libxaw7 libxcb-shape0 libxft2 libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxmu6 libxpm4 libxss1 libxv1 libxxf86dga1 m4 po-debconf python-pkg-resources python-scour python-six r-base r-base-core r-base-dev r-base-html r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart r-cran-spatial r-cran-survival r-doc-html r-recommended x11-utils x11-xserver-utils xdg-utils zip zlib1g-dev 0 upgraded, 112 newly installed, 0 to remove and 162 not upgraded. Need to get 59.3 MB of archives. After this operation, 141 MB of additional disk space will be used. Do you want to continue? [Y/n] y Get:1 http://mirrors.tencentyun.com/ubuntu xenial/main amd64 libunistring0 amd64 0.9.3-5.2ubuntu1 [279 kB] Get:2 http://mirrors.tencentyun.com/ubuntu xenial/main amd64 libxft2 amd64 2.3.2-1 [36.1 kB] Get:3 http://mirrors.tencentyun.com/ubuntu xenial/main amd64 libxss1 amd64 1:1.2.2-1 [8582 B] Get:4 http://mirrors.tencentyun.com/ubuntu xenial/main amd64 libxv1 amd64 2:1.0.10-1 [10.3 kB] Get:5 http://mirrors.tencentyun.com/ubuntu xenial/main amd64 libxxf86dga1 amd64 2:1.1.4-1 [13.7 kB] Get:6 http://mirrors.tencentyun.com/ubuntu xenial/main amd64 m4 amd64 1.4.17-5 [195 kB] Get:7 http://mirrors.tencentyun.com/ubuntu xenial/main amd64 autoconf all 2.69-9 [321 kB] Get:8 http://mirrors.tencentyun.com/ubuntu xenial/main amd64 autotools-dev all 20150820.1 [39.8 kB] Get:9 http://mirrors.tencentyun.com/ubuntu xenial/main amd64 automake all 1:1.15-4ubuntu1 [510 kB] Get:10 http://mirrors.tencentyun.com/ubuntu xenial/main amd64 bzip2-doc all 1.0.6-8 [295 kB] Get:11 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Processing triggers for install-info (6.1.0.dfsg.1-5) ... Processing triggers for man-db (2.7.5-1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Processing triggers for hicolor-icon-theme (0.15-0ubuntu1) ... Processing triggers for mime-support (3.59ubuntu1) ... Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ... Setting up libxft2:amd64 (2.3.2-1) ... Setting up libxss1:amd64 (1:1.2.2-1) ... Setting up libxv1:amd64 (2:1.0.10-1) ... Setting up libxxf86dga1:amd64 (2:1.1.4-1) ... Setting up m4 (1.4.17-5) ... Setting up autoconf (2.69-9) ... Setting up autotools-dev (20150820.1) ... Setting up automake (1:1.15-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up bzip2-doc (1.0.6-8) ... Setting up libcroco3:amd64 (0.6.11-1) ... Setting up gettext (0.19.7-2ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.19) ... Setting up libarchive-zip-perl (1.56-2) ... Setting up libfile-stripnondeterminism-perl (0.015-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libhtml-tree-perl (5.03-2) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-ssleay-perl (1.72-1build1) ... Setting up libio-socket-ssl-perl (2.024-1) ... Setting up libnet-http-perl (6.09-1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up python-six (1.10.0-3) ... Setting up python-pkg-resources (20.7.0-1) ... Setting up python-scour (0.32-1) ... Setting up libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.4) ... Setting up libgfortran-5-dev:amd64 (5.4.0-6ubuntu1~16.04.4) ... Setting up gfortran-5 (5.4.0-6ubuntu1~16.04.4) ... Setting up gfortran (4:5.3.1-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libasprintf-dev:amd64 (0.19.7-2ubuntu3) ... Setting up libblas-common (3.6.0-2ubuntu2) ... Setting up libblas3 (3.6.0-2ubuntu2) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libblas-dev (3.6.0-2ubuntu2) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up libbz2-dev:amd64 (1.0.6-8) ... Setting up libipc-system-simple-perl (1.25-3) ... Setting up libfile-basedir-perl (0.07-1) ... Setting up libfile-desktopentry-perl (0.22-1) ... Setting up libfile-mimeinfo-perl (0.27-1) ... Setting up libfont-afm-perl (1.20-1) ... Setting up libfontenc1:amd64 (1:1.1.3-1) ... Setting up libgettextpo0:amd64 (0.19.7-2ubuntu3) ... Setting up libgettextpo-dev:amd64 (0.19.7-2ubuntu3) ... Setting up libhtml-form-perl (6.03-1) ... Setting up libhtml-format-perl (2.11-2) ... Setting up libhttp-daemon-perl (6.01-1) ... Setting up libjpeg-turbo8-dev:amd64 (1.4.2-0ubuntu3) ... Setting up libjpeg8-dev:amd64 (8c-2ubuntu8) ... Setting up libjpeg-dev:amd64 (8c-2ubuntu8) ... Setting up liblapack3 (3.6.0-2ubuntu2) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up liblapack-dev (3.6.0-2ubuntu2) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up libsys-hostname-long-perl (1.5-1) ... Setting up libmail-sendmail-perl (0.79.16-1) ... Setting up libnet-smtp-ssl-perl (1.03-1) ... Setting up libmailtools-perl (2.13-1) ... Setting up libtinfo-dev:amd64 (6.0+20160213-1ubuntu1) ... Setting up libncurses5-dev:amd64 (6.0+20160213-1ubuntu1) ... Setting up libpaper1:amd64 (1.1.24+nmu4ubuntu1) ... Creating config file /etc/papersize with new version Setting up libpaper-utils (1.1.24+nmu4ubuntu1) ... Setting up libpcre16-3:amd64 (2:8.38-3.1) ... Setting up libpcre32-3:amd64 (2:8.38-3.1) ... Setting up libpcre3-dev:amd64 (2:8.38-3.1) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4) ... Setting up libpng12-dev:amd64 (1.2.54-1ubuntu1) ... Setting up libreadline6-dev:amd64 (6.3-8ubuntu2) ... Setting up libreadline-dev:amd64 (6.3-8ubuntu2) ... Setting up libtie-ixhash-perl (1.23-2) ... Setting up libtk8.6:amd64 (8.6.5-1) ... Setting up libx11-protocol-perl (0.56-7) ... Setting up libxmu6:amd64 (2:1.1.2-2) ... Setting up libxpm4:amd64 (1:3.5.11-1ubuntu0.16.04.1) ... Setting up libxaw7:amd64 (2:1.0.13-1) ... Setting up libxcb-shape0:amd64 (1.11.1-1ubuntu1) ... Setting up libxml-xpathengine-perl (0.13-1) ... Setting up zip (3.0-11) ... Setting up xdg-utils (1.1.1-1ubuntu1.16.04.1) ... Setting up r-base-core (3.2.3-4) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-boot (1.3-17-1) ... Setting up r-cran-cluster (2.0.3-1) ... Setting up r-cran-foreign (0.8.66-1) ... Setting up r-cran-mass (7.3-45-1) ... Setting up r-cran-kernsmooth (2.23-15-1) ... Setting up r-cran-lattice (0.20-33-1) ... Setting up r-cran-nlme (3.1.124-1) ... Setting up r-cran-matrix (1.2-3-1) ... Setting up r-cran-mgcv (1.8-11-1) ... Setting up r-cran-survival (2.38-3-1) ... Setting up r-cran-rpart (4.1-10-1) ... Setting up r-cran-class (7.3-14-1) ... Setting up r-cran-nnet (7.3-12-1) ... Setting up r-cran-spatial (7.3-11-1) ... Setting up r-cran-codetools (0.2-14-1) ... Setting up r-recommended (3.2.3-4) ... Setting up r-base (3.2.3-4) ... Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ... Setting up r-doc-html (3.2.3-4) ... Setting up x11-utils (7.7+3) ... Setting up x11-xserver-utils (7.7+7) ... Setting up libauthen-sasl-perl (2.1600-1) ... Setting up r-base-html (3.2.3-4) ... Setting up libwww-perl (6.15-1) ... Setting up libxml-parser-perl (2.44-1build1) ... Setting up intltool (0.51.0-2) ... Setting up libxml-twig-perl (1:3.48-1) ... Setting up libnet-dbus-perl (1.1.0-3build1) ... Setting up dh-strip-nondeterminism (0.015-1) ... Setting up debhelper (9.20160115ubuntu3) ... Setting up liblwp-protocol-https-perl (6.06-2) ... Setting up dh-translations (129) ... Setting up cdbs (0.4.130ubuntu2) ... Setting up r-base-dev (3.2.3-4) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... root@VM-52-248-ubuntu:/var/www/html/scalaw# apt-get install r-base-dev Reading package lists... Done Building dependency tree Reading state information... Done r-base-dev is already the newest version (3.2.3-4). r-base-dev set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 162 not upgraded. root@VM-52-248-ubuntu:/var/www/html/scalaw#