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  • 数据结构 DNA序列 (KMP+暴力,或者STL+暴力)

    Description

    现有一个项目旨在从成千上万捐献的DNA分析地球上人类是如 何繁衍的。该项目邀请你写一个程序找出给定的DNA片段之间的相同之处,使得对个体的调查相关联。一个DNA碱基序列是指把分子中发现的氮基的序列给罗列 出来。有四种氮基:腺嘌呤(A)、胸腺嘧啶(T)、鸟嘌呤(G)和胞嘧啶(C),例如,一个6碱基DNA序列可以表示为TAGACC。给出一个DNA碱基 序列的集合,确定在所有序列中都出现的最长的字典序最小的碱基序列。

    Input

    第一行是一个整数,代表数据组数。每组数据第一行为一个整数n(2<=n<=60),代表有n个DNA串,接下来n行每行一个长度不超过500的字符串(每组数据中的字符串长度相同),代表DNA序列。

    Output

    每组数据输出一行,如果在所有序列都出现的最长碱基序列长度不小于3,输出这个最长碱基序列,否则输出“no significant commonalities”。

    Sample Input

    3
    2
    GATACCAGATACCAGATACCAGATACCAGATACCAGATACCAGATACCAGATACCAGATA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
    3
    GATACCAGATACCAGATACCAGATACCAGATACCAGATACCAGATACCAGATACCAGATA GATACTAGATACTAGATACTAGATACTAAAGGAAAGGGAAAAGGGGAAAAAGGGGGAAAA GATACCAGATACCAGATACCAGATACCAAAGGAAAGGGAAAAGGGGAAAAAGGGGGAAAA
    3
    CATCATCATCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ACATCATCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AACATCATCATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

    Sample Output

    no significant commonalities
    AGATAC
    CATCATCAT

    HINT

    考察知识点:KMP算法。


    都说是KMP了,不要乱暴了。会被rejudge的。


    Append Code

    析:这个题可以枚举第一个串的长度,然后去和其他的n-1个串进行匹配,也可以用STL中的 find 来找。

    代码如下:

    #pragma comment(linker, "/STACK:1024000000,1024000000")
    #include <cstdio>
    #include <string>
    #include <cstdlib>
    #include <cmath>
    #include <iostream>
    #include <cstring>
    #include <set>
    #include <queue>
    #include <algorithm>
    #include <vector>
    #include <map>
    #include <cctype>
    #include <cmath>
    #include <stack>
    #define freopenr freopen("in.txt", "r", stdin)
    #define freopenw freopen("out.txt", "w", stdout)
    using namespace std;
    typedef long long LL;
    typedef pair<int, int> P;
    const int INF = 0x3f3f3f3f;
    const double inf = 0x3f3f3f3f3f3f;
    const LL LNF = 0x3f3f3f3f3f3f;
    const double PI = acos(-1.0);
    const double eps = 1e-8;
    const int maxn = 1e3 + 100;
    const int mod = 1e9 + 7;
    const int dr[] = {-1, 0, 1, 0};
    const int dc[] = {0, 1, 0, -1};
    const char *Hex[] = {"0000", "0001", "0010", "0011", "0100", "0101", "0110", "0111", "1000", "1001", "1010", "1011", "1100", "1101", "1110", "1111"};
    int n, m;
    const int mon[] = {0, 31, 28, 31, 30, 31, 30, 31, 31, 30, 31, 30, 31};
    const int monn[] = {0, 31, 29, 31, 30, 31, 30, 31, 31, 30, 31, 30, 31};
    inline int Min(int a, int b){ return a < b ? a : b; }
    inline int Max(int a, int b){ return a > b ? a : b; }
    inline LL Min(LL a, LL b){ return a < b ? a : b; }
    inline LL Max(LL a, LL b){ return a > b ? a : b; }
    inline bool is_in(int r, int c){
        return r >= 0 && r < n && c >= 0 && c < m;
    }
    vector<string> v;
    string s;
    char t[505];
    int f[505];
    string ans;
    
    void getfail(){
        f[0] = f[1] = 0;
        for(int i = 1; i < s.size(); ++i){
            int j = f[i];
            while(j && s[i] != s[j])  j = f[j];
            f[i+1] = s[i] == s[j] ? j+1 : 0;
        }
    }
     
    bool match(int cnt){
        int j = 0;
        m = v[cnt].size();
        for(int i = 0; i < m; ++i){
            while(j && s[j] != v[cnt][i])  j = f[j];
            if(s[j] == v[cnt][i]) ++j;
            if(s.size() == j)   return true;
        }
        return false;
    }
    
    int main(){
        int T;   cin >> T;
        while(T--){
            scanf("%d", &n);
            int xx = INF;
            v.clear();
            for(int i = 0; i < n; ++i){
                scanf("%s", t);
                v.push_back(t);
            }
            xx = v[0].size();
            ans.clear();
            for(int j = xx; j >= 3 && j >= ans.size() ; --j){
                for(int i = 0; i + j <= xx; ++i){
                    if(ans.size() > j)  continue;
                    s = v[0].substr(i, j);
                    if(ans.size() == j && ans <= s)  continue;
                    bool ok = true;
                    for(int k = 1; k < n; ++k)
                        if(v[k].find(s) == s.npos) { ok = false;  break; }
     
                    if(ok)  ans = s;
     
                }
                if(ans.size() >= j)  break;
            }
            printf("%s
    ", ans.size() < 3 ? "no significant commonalities" : ans.c_str());
        }
        return 0;
    }
    
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  • 原文地址:https://www.cnblogs.com/dwtfukgv/p/5875567.html
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