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  • Linux 使用记1 fastx toolkit安装问题

    1

    安装fastx toolkit的时候,步骤按https://blog.csdn.net/LotusWang0723/article/details/78723409

    其中可能会出现如下报错

    text_line_reader.cpp: In member function ‘bool TextLineReader::next_line()’:
    text_line_reader.cpp:47:9: error: cannot convert ‘std::istream {aka std::basic_istream<char>}’ to ‘bool’ in return
      return input_stream ;
             ^~~~~~~~~~~~
    make[3]: *** [text_line_reader.lo] Error 1
    make[2]: *** [all-recursive] Error 1
    make[1]: *** [all-recursive] Error 1
    make: *** [all] Error 2

    可以找出问题文件,这样解决: 

    更多信息:

    https://reviews.freebsd.org/D14892?id=40873

    https://stackoverflow.com/questions/38659115/make-fails-with-error-cannot-convert-stdistream-aka-stdbasic-istreamchar 

    2.

    这一步发生问题

     

    Alternatively, you may set the environment variables GTEXTUTILS_CFLAGS
    and GTEXTUTILS_LIBS to avoid the need to call pkg-config.
    See the pkg-config man page for more details.

     然后输入命令解决

    sudo apt-get install pkg-config && sudo pkg-config

    3.

    在安装fastx toolkit 时make的时候报错

    fasta_formatter.cpp: In function ‘void parse_command_line(int, char**)’:
    fasta_formatter.cpp:105:9: error: this statement may fall through [-Werror=implicit-fallthrough=]
    usage();
    ~~~~~^~
    fasta_formatter.cpp:107:3: note: here
    case 'i':
    ^~~~
    cc1plus: all warnings being treated as errors
    make[3]: *** [Makefile:425: fasta_formatter.o] Error 1
    make[3]: Leaving directory '/tmp/SBo/fastx_toolkit-0.0.14/src/fasta_formatter'

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  • 原文地址:https://www.cnblogs.com/lokwongho/p/10265890.html
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